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(r)(+)-3-chloro-1-phenyl-1-propanol in complex with T4 lysozyme L99A/M102Q
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LGU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 277 2.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 7.1, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.77 55.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.368 α = 90 b = 60.368 β = 90 c = 96.895 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2007-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.115872 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 52.27 99.9 0.106 11.5 6.3 29769 29769
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.61 100 0.361 5.9 2923
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1LGU 1.557 52.27 29676 29676 1504 99.28 0.184 0.184 0.183 0.1813 0.205 0.2018 RANDOM 15.333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.16 -0.32 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.644 r_dihedral_angle_4_deg 11.412 r_dihedral_angle_3_deg 11.086 r_dihedral_angle_1_deg 4.897 r_sphericity_free 3.144 r_scangle_it 2.612 r_sphericity_bonded 1.947 r_scbond_it 1.918 r_mcangle_it 1.17 r_angle_refined_deg 1.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.644 r_dihedral_angle_4_deg 11.412 r_dihedral_angle_3_deg 11.086 r_dihedral_angle_1_deg 4.897 r_sphericity_free 3.144 r_scangle_it 2.612 r_sphericity_bonded 1.947 r_scbond_it 1.918 r_mcangle_it 1.17 r_angle_refined_deg 1.127 r_rigid_bond_restr 1.11 r_mcbond_it 0.766 r_nbtor_refined 0.304 r_nbd_refined 0.189 r_symmetry_vdw_refined 0.176 r_xyhbond_nbd_refined 0.131 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1317 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 32
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection REFMAC phasing