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2-(n-propylthio)ethanol in complex with T4 lysozyme L99A/M102Q
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LGU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 277 2.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 7.1, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.77 55.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.307 α = 90 b = 60.307 β = 90 c = 97.118 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2007-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.115872 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.467 52.2 100 0.071 15.6 8.6 35678 35678
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.467 1.52 99.9 0.466 7.2 3519
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1LGU 1.467 52.2 35597 35597 1784 99.83 0.181 0.181 0.18 0.1759 0.206 0.2023 RANDOM 16.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.07 0.15 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.948 r_dihedral_angle_4_deg 14.636 r_dihedral_angle_3_deg 10.826 r_dihedral_angle_1_deg 4.853 r_sphericity_free 2.973 r_scangle_it 2.356 r_sphericity_bonded 2.197 r_scbond_it 1.752 r_mcangle_it 1.136 r_angle_refined_deg 1.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.948 r_dihedral_angle_4_deg 14.636 r_dihedral_angle_3_deg 10.826 r_dihedral_angle_1_deg 4.853 r_sphericity_free 2.973 r_scangle_it 2.356 r_sphericity_bonded 2.197 r_scbond_it 1.752 r_mcangle_it 1.136 r_angle_refined_deg 1.108 r_rigid_bond_restr 1.003 r_mcbond_it 0.766 r_nbtor_refined 0.306 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.12 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1338 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection REFMAC phasing