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2-ethoxyphenol in complex with T4 lysozyme L99A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 184L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 277 2.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 7.1, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.79 55.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.487 α = 90 b = 60.487 β = 90 c = 97.136 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE RIGAKU RAXIS IV 2006-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 52.41 99.4 0.074 14.8 5.2 29774 29774
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.56 1.62 100 0.632 5.4 2936
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 184L 1.7 52.41 23066 23066 1143 99.24 0.193 0.193 0.191 0.1895 0.23 0.226 RANDOM 18.094
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.22 0.44 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.406 r_dihedral_angle_4_deg 19.99 r_dihedral_angle_3_deg 11.74 r_dihedral_angle_1_deg 5.897 r_scangle_it 3.064 r_scbond_it 2.105 r_angle_refined_deg 1.234 r_mcangle_it 1.052 r_mcbond_it 0.682 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.406 r_dihedral_angle_4_deg 19.99 r_dihedral_angle_3_deg 11.74 r_dihedral_angle_1_deg 5.897 r_scangle_it 3.064 r_scbond_it 2.105 r_angle_refined_deg 1.234 r_mcangle_it 1.052 r_mcbond_it 0.682 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.077 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1308 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 25
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection REFMAC phasing