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Crystal structure of a putative lipase (NP_343859.1) from Sulfolobus solfataricus at 1.85 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 NANODROP, 0.2M CaCl2, 28.0% PEG 400, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.44 64.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.333 α = 90 b = 83.333 β = 90 c = 140.032 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-07-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97937, 0.97916 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 28.548 100 0.105 0.105 14 7.3 48739
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 100 0.896 0.896 2.3 7.3 3552
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 28.548 48690 2458 99.95 0.16 0.158 0.1639 0.188 0.1922 RANDOM 25.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.94 0.47 0.94 -1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.898 r_dihedral_angle_4_deg 22.289 r_dihedral_angle_3_deg 12.128 r_scangle_it 6.341 r_dihedral_angle_1_deg 5.621 r_scbond_it 4.449 r_mcangle_it 2.974 r_mcbond_it 2.059 r_angle_refined_deg 1.686 r_angle_other_deg 1.019
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.898 r_dihedral_angle_4_deg 22.289 r_dihedral_angle_3_deg 12.128 r_scangle_it 6.341 r_dihedral_angle_1_deg 5.621 r_scbond_it 4.449 r_mcangle_it 2.974 r_mcbond_it 2.059 r_angle_refined_deg 1.686 r_angle_other_deg 1.019 r_mcbond_other 0.526 r_metal_ion_refined 0.291 r_symmetry_hbond_refined 0.248 r_nbd_refined 0.215 r_symmetry_vdw_other 0.208 r_xyhbond_nbd_refined 0.205 r_symmetry_vdw_refined 0.2 r_nbd_other 0.193 r_nbtor_refined 0.187 r_chiral_restr 0.107 r_xyhbond_nbd_other 0.104 r_nbtor_other 0.091 r_symmetry_metal_ion_refined 0.066 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2773 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction