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Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 20% PEG 3350, 0.2M K Citrate, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.46 49.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.107 α = 90 b = 65.107 β = 90 c = 106.627 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 55.56 99.19 0.084 49.3 16.8 11642 11548 2 46.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.257 97.6 0.58 1.85 10.3 875
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 55.56 11548 11548 580 99.19 0.2339 0.2339 0.23299 0.2373 0.25257 0.2639 RANDOM 46.766
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 -0.49 0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.526 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_4_deg 16.165 r_dihedral_angle_1_deg 5.343 r_scangle_it 2.7 r_scbond_it 1.969 r_angle_refined_deg 1.37 r_mcangle_it 1.032 r_angle_other_deg 0.984 r_mcbond_it 0.865
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.526 r_dihedral_angle_3_deg 16.78 r_dihedral_angle_4_deg 16.165 r_dihedral_angle_1_deg 5.343 r_scangle_it 2.7 r_scbond_it 1.969 r_angle_refined_deg 1.37 r_mcangle_it 1.032 r_angle_other_deg 0.984 r_mcbond_it 0.865 r_symmetry_vdw_other 0.27 r_symmetry_vdw_refined 0.231 r_symmetry_hbond_refined 0.225 r_nbd_refined 0.208 r_nbd_other 0.184 r_xyhbond_nbd_refined 0.181 r_nbtor_refined 0.18 r_mcbond_other 0.147 r_nbtor_other 0.086 r_chiral_restr 0.078 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1498 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing