☰ Navigation Tabs
Crystal structure of a duf1285 family protein (sbal_2486) from shewanella baltica os155 at 1.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 277 NANODROP, 20.0% Isopropanol, 20.0% PEG 4000, 0.1M Citrate pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.59 52.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.409 α = 90 b = 62.286 β = 90 c = 73.247 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-08-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9795, 0.9798, 1.0000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 29.854 99.6 0.058 0.058 7.8 4.9 35222 -4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 98.5 0.613 0.613 1.3 4.6 2546
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.4 29.854 35168 1764 99.43 0.164 0.162 0.1717 0.196 0.2013 RANDOM 13.495
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.1 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.717 r_dihedral_angle_3_deg 13.126 r_dihedral_angle_4_deg 10.076 r_dihedral_angle_1_deg 7.175 r_scangle_it 6.298 r_sphericity_free 5.761 r_scbond_it 4.634 r_sphericity_bonded 3.852 r_mcangle_it 3.445 r_rigid_bond_restr 2.629
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.717 r_dihedral_angle_3_deg 13.126 r_dihedral_angle_4_deg 10.076 r_dihedral_angle_1_deg 7.175 r_scangle_it 6.298 r_sphericity_free 5.761 r_scbond_it 4.634 r_sphericity_bonded 3.852 r_mcangle_it 3.445 r_rigid_bond_restr 2.629 r_mcbond_it 2.479 r_mcbond_other 1.528 r_angle_refined_deg 1.519 r_angle_other_deg 0.936 r_nbd_refined 0.24 r_nbd_other 0.21 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.179 r_symmetry_vdw_other 0.158 r_metal_ion_refined 0.115 r_symmetry_vdw_refined 0.113 r_symmetry_hbond_refined 0.112 r_chiral_restr 0.104 r_nbtor_other 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1018 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHARP phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SHELX phasing