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Crystal structure of the putative transcriptional regulator from Streptomyces coelicolor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 0.1M Tris-HCl pH 8.5, 0.2M MgCl2, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.514 18.735
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.768 α = 90 b = 43.768 β = 90 c = 170.735 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97920 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 96.3 0.116 8.3 20.8 6859 6859
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 75.2 0.384 2.2 7.4 513
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 42.68 6124 6124 675 96.28 0.225 0.225 0.218 0.2123 0.292 0.286 RANDOM 69.685
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 1.15 -2.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.176 r_dihedral_angle_3_deg 21.298 r_dihedral_angle_4_deg 18.799 r_scangle_it 17.536 r_scbond_it 13.252 r_mcangle_it 10.397 r_mcbond_it 8.426 r_dihedral_angle_1_deg 6.616 r_angle_refined_deg 1.804 r_symmetry_vdw_refined 0.446
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.176 r_dihedral_angle_3_deg 21.298 r_dihedral_angle_4_deg 18.799 r_scangle_it 17.536 r_scbond_it 13.252 r_mcangle_it 10.397 r_mcbond_it 8.426 r_dihedral_angle_1_deg 6.616 r_angle_refined_deg 1.804 r_symmetry_vdw_refined 0.446 r_symmetry_hbond_refined 0.325 r_nbtor_refined 0.316 r_nbd_refined 0.281 r_xyhbond_nbd_refined 0.183 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1188 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELX phasing MLPHARE phasing RESOLVE phasing