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Glutathione amide reductase from Chromatium gracile
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GET E.coli gluthione reductase, PDB entry 1GET
Crystallization Crystal Properties Matthews coefficient Solvent content 2.94 58.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.933 α = 90 b = 71.933 β = 90 c = 223.854 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.9073 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 62670
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT E.coli gluthione reductase, PDB entry 1GET 2.1 19.96 59494 3176 100 0.1994 0.19695 0.2024 0.24626 0.2336 RANDOM 29.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.65 -1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.354 r_dihedral_angle_4_deg 19.944 r_dihedral_angle_3_deg 17.171 r_dihedral_angle_1_deg 6.417 r_scangle_it 2.938 r_scbond_it 1.922 r_angle_refined_deg 1.533 r_mcangle_it 1.13 r_mcbond_it 0.676 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.354 r_dihedral_angle_4_deg 19.944 r_dihedral_angle_3_deg 17.171 r_dihedral_angle_1_deg 6.417 r_scangle_it 2.938 r_scbond_it 1.922 r_angle_refined_deg 1.533 r_mcangle_it 1.13 r_mcbond_it 0.676 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.278 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.11 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6672 Nucleic Acid Atoms Solvent Atoms 449 Heterogen Atoms 118
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing