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Crystal structure of ATP synthase subunit alpha (TM1612) from Thermotoga maritima at 2.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.21 277 NANODROP, 1.3% PEG 6000, 0.1M Citric acid pH 4.21, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.48 72.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.41 α = 90 b = 97.41 β = 90 c = 219.38 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.97960 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 48.679 99.8 0.143 11.44 7.17 62330 -3 27.14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.19 99.8 0.897 2 7.29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 48.679 62319 3176 99.77 0.182 0.18 0.1888 0.215 0.223 RANDOM 29.378
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.62 1.62 -3.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.171 r_dihedral_angle_4_deg 18.325 r_dihedral_angle_3_deg 13.231 r_scangle_it 5.39 r_dihedral_angle_1_deg 4.831 r_scbond_it 4.311 r_mcangle_it 3.365 r_mcbond_it 2.401 r_angle_refined_deg 1.644 r_angle_other_deg 0.978
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.171 r_dihedral_angle_4_deg 18.325 r_dihedral_angle_3_deg 13.231 r_scangle_it 5.39 r_dihedral_angle_1_deg 4.831 r_scbond_it 4.311 r_mcangle_it 3.365 r_mcbond_it 2.401 r_angle_refined_deg 1.644 r_angle_other_deg 0.978 r_mcbond_other 0.521 r_symmetry_vdw_refined 0.31 r_symmetry_vdw_other 0.285 r_nbd_refined 0.22 r_nbd_other 0.201 r_symmetry_hbond_refined 0.196 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.099 r_nbtor_other 0.088 r_bond_refined_d 0.017 r_metal_ion_refined 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3802 Nucleic Acid Atoms Solvent Atoms 465 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHARP phasing