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Crystal structure of a domain of the sensory box sensor histidine kinase/response regulator from Geobacter sulfurreducens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 0.2M Ammonium acetate, 0.1M Bis-Tris, 25% PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.21 44.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.248 α = 90 b = 62.501 β = 94.82 c = 71.203 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 mirrors 2007-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97940 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 70.89 99.51 0.069 31.36 8.6 55965 55938 2 17.65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.642 95.59 0.508 1.73 6.4 4330
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 70.89 55938 55938 2979 99.51 0.1812 0.1812 0.17906 0.1844 0.22098 0.2249 RANDOM 17.515
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.44 -0.56 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.957 r_dihedral_angle_4_deg 13.758 r_dihedral_angle_3_deg 12.231 r_sphericity_free 6.596 r_dihedral_angle_1_deg 5.814 r_scangle_it 4.014 r_scbond_it 2.819 r_sphericity_bonded 2.801 r_mcangle_it 1.966 r_rigid_bond_restr 1.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.957 r_dihedral_angle_4_deg 13.758 r_dihedral_angle_3_deg 12.231 r_sphericity_free 6.596 r_dihedral_angle_1_deg 5.814 r_scangle_it 4.014 r_scbond_it 2.819 r_sphericity_bonded 2.801 r_mcangle_it 1.966 r_rigid_bond_restr 1.782 r_mcbond_it 1.599 r_angle_refined_deg 1.5 r_angle_other_deg 0.929 r_mcbond_other 0.515 r_symmetry_vdw_other 0.308 r_nbd_refined 0.23 r_nbd_other 0.205 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.167 r_symmetry_vdw_refined 0.161 r_chiral_restr 0.09 r_nbtor_other 0.087 r_bond_refined_d 0.014 r_xyhbond_nbd_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3565 Nucleic Acid Atoms Solvent Atoms 483 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing