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Aquifex aeolicus FtsZ with 8-morpholino-GTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R6R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 292 15 g/L FtsZ, 0.1 M Na citrate pH 5.5, 0.1 M NaCl, 0.06 M MgCl2, 25% PEG400, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 1.94 36.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.846 α = 90 b = 74.177 β = 95.08 c = 44.197 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9792 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 30 94.1 0.051 0.051 13.4 2 55046 51744 2 12.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.48 98.1 0.153 0.153 4.7 2 7899
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2R6R 1.402 16.85 49114 2606 93.8 0.13936 0.13694 0.1382 0.18441 0.1289 RANDOM 11.772
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.08 0.55 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.982 r_dihedral_angle_4_deg 19.812 r_dihedral_angle_3_deg 13.581 r_sphericity_free 8.775 r_dihedral_angle_1_deg 5.967 r_scangle_it 5.919 r_scbond_it 4.309 r_sphericity_bonded 4.274 r_mcangle_it 2.784 r_mcbond_it 2.401
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.982 r_dihedral_angle_4_deg 19.812 r_dihedral_angle_3_deg 13.581 r_sphericity_free 8.775 r_dihedral_angle_1_deg 5.967 r_scangle_it 5.919 r_scbond_it 4.309 r_sphericity_bonded 4.274 r_mcangle_it 2.784 r_mcbond_it 2.401 r_rigid_bond_restr 2.068 r_angle_refined_deg 1.84 r_angle_other_deg 1.043 r_mcbond_other 0.794 r_symmetry_vdw_other 0.267 r_symmetry_vdw_refined 0.238 r_nbd_refined 0.227 r_nbd_other 0.191 r_symmetry_hbond_refined 0.19 r_xyhbond_nbd_refined 0.182 r_nbtor_refined 0.176 r_chiral_restr 0.133 r_nbtor_other 0.086 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2461 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 39
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling