☰ Navigation Tabs
Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase from Francisella tularensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 293 0.1 M Tris, 0.2 M MgCl2, 19%PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.81 56.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.909 α = 90 b = 163.152 β = 90 c = 180.792 γ = 90
Symmetry Space Group F 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 112 IMAGE PLATE RIGAKU RAXIS IV++ 2006-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 97.9 0.071 29.3 40445 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 82.7 0.496 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 39.53 38123 2025 98 0.197 0.194 0.1849 0.253 0.2462 RANDOM 43.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 0.04 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.024 r_dihedral_angle_3_deg 16.936 r_dihedral_angle_4_deg 16.711 r_dihedral_angle_1_deg 6.939 r_scangle_it 5.506 r_scbond_it 3.707 r_mcangle_it 2.583 r_mcbond_it 1.456 r_angle_refined_deg 1.453 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.024 r_dihedral_angle_3_deg 16.936 r_dihedral_angle_4_deg 16.711 r_dihedral_angle_1_deg 6.939 r_scangle_it 5.506 r_scbond_it 3.707 r_mcangle_it 2.583 r_mcbond_it 1.456 r_angle_refined_deg 1.453 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.244 r_symmetry_hbond_refined 0.239 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.182 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5663 Nucleic Acid Atoms Solvent Atoms 425 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing