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Pentamer Structure of Major Capsid protein L1 of Human Papilloma Virus Type 35
Crystallization Crystal Properties Matthews coefficient Solvent content 3.69 66.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.41 α = 90 b = 176.606 β = 92.11 c = 197.073 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 50 18.9 2.6 6.19 119918
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.3 15 119918 7364 95.62 0.31715 0.31549 0.3185 0.34818 0.3539 RANDOM 61.764
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -12.63 2.58 -0.12 12.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.858 r_dihedral_angle_4_deg 19.979 r_dihedral_angle_3_deg 19.507 r_scangle_it 8.273 r_dihedral_angle_1_deg 6.181 r_scbond_it 6.113 r_mcangle_it 5.476 r_mcbond_it 3.596 r_angle_refined_deg 3.309 r_symmetry_vdw_refined 0.374
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.858 r_dihedral_angle_4_deg 19.979 r_dihedral_angle_3_deg 19.507 r_scangle_it 8.273 r_dihedral_angle_1_deg 6.181 r_scbond_it 6.113 r_mcangle_it 5.476 r_mcbond_it 3.596 r_angle_refined_deg 3.309 r_symmetry_vdw_refined 0.374 r_nbtor_refined 0.351 r_symmetry_hbond_refined 0.311 r_nbd_refined 0.292 r_chiral_restr 0.2 r_xyhbond_nbd_refined 0.188 r_bond_refined_d 0.047 r_gen_planes_refined 0.016 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 49350 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement