☰ Navigation Tabs
Pentamer structure of Major Capsid Protein L1 of Human Papilloma Virus type 16
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 298 PEG1000, MES, 0.1 M NaSCN, pH 6.5, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.43 49.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105 α = 90 b = 159.052 β = 90 c = 413.738 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.7 50 60322
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.7 15 56366 2971 80.51 0.25015 0.24729 0.241 0.30516 0.2935 RANDOM 80.332
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 17.97 -4.65 -13.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.061 r_dihedral_angle_4_deg 22.602 r_dihedral_angle_3_deg 21.745 r_scangle_it 10.302 r_scbond_it 7.349 r_dihedral_angle_1_deg 6.847 r_mcangle_it 5.503 r_mcbond_it 4.154 r_angle_refined_deg 3.885 r_symmetry_vdw_refined 0.672
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.061 r_dihedral_angle_4_deg 22.602 r_dihedral_angle_3_deg 21.745 r_scangle_it 10.302 r_scbond_it 7.349 r_dihedral_angle_1_deg 6.847 r_mcangle_it 5.503 r_mcbond_it 4.154 r_angle_refined_deg 3.885 r_symmetry_vdw_refined 0.672 r_symmetry_hbond_refined 0.525 r_nbtor_refined 0.368 r_nbd_refined 0.34 r_xyhbond_nbd_refined 0.258 r_chiral_restr 0.227 r_bond_refined_d 0.06 r_gen_planes_refined 0.018 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 49650 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement