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Crystal Structure of the two MBT repeats from Sex-Comb on Midleg (SCM) in complex with methyl lysine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.3 293 15% (w/v) PEG3350, 100 mM calcium acetate and 3% ethanol, pH 7.3, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.03 α = 90 b = 83.03 β = 90 c = 75.79 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 .934 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 46.42 99.9 0.0718 6.6 15.3 12304 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 99.9 0.482 1.7 16.6 1742
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 46.42 11867 365 99.98 0.17473 0.17473 0.17344 0.1729 0.22147 0.2263 RANDOM 42.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.97 0.97 -1.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.986 r_dihedral_angle_4_deg 18.594 r_dihedral_angle_3_deg 15.63 r_dihedral_angle_1_deg 5.98 r_scangle_it 2.313 r_scbond_it 1.48 r_angle_refined_deg 1.303 r_mcangle_it 0.98 r_mcbond_it 0.601 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.986 r_dihedral_angle_4_deg 18.594 r_dihedral_angle_3_deg 15.63 r_dihedral_angle_1_deg 5.98 r_scangle_it 2.313 r_scbond_it 1.48 r_angle_refined_deg 1.303 r_mcangle_it 0.98 r_mcbond_it 0.601 r_nbtor_refined 0.299 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.171 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1661 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement DNA data collection XDS data reduction XSCALE data scaling PHASER phasing