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Crystal Structure of Wild-type E.coli GS in complex with ADP and Glucose(wtGSd)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QYY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.7 277 40%(w/v) PEG 4000, 0.2 M Na tartrate and 0.1 M HEPPSO (pH 7.7), VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 5.7 78.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.166 α = 90 b = 126.166 β = 90 c = 151.745 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 1.0 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.367 97.66 98.1 0.059 11.9 5.1 47317 2.75 58.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.367 2.45 99 0.504 2.75 4.5 4785
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2QYY 2.367 97.13 2.75 47142 2386 97.66 0.21 0.183 0.182 0.1807 0.203 0.2017 RANDOM 41.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.75 0.75 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.478 r_dihedral_angle_4_deg 23.304 r_dihedral_angle_3_deg 18.106 r_dihedral_angle_1_deg 6.322 r_scangle_it 2.184 r_scbond_it 1.482 r_angle_refined_deg 1.448 r_mcangle_it 1.008 r_mcbond_it 0.567 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.478 r_dihedral_angle_4_deg 23.304 r_dihedral_angle_3_deg 18.106 r_dihedral_angle_1_deg 6.322 r_scangle_it 2.184 r_scbond_it 1.482 r_angle_refined_deg 1.448 r_mcangle_it 1.008 r_mcbond_it 0.567 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.125 r_chiral_restr 0.114 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3735 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 80
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection