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Crystal structure of putative acetyltransferase (YP_831484.1) from Arthrobacter sp. FB24 at 1.65 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 NANODROP, 15.0% Glycerol, 8.5% Isopropanol, 17.0% PEG 4000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.65 53.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.1 α = 90 b = 40.26 β = 123.39 c = 81.27 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-07-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97929, 0.97905 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 27.746 89.7 0.027 13.07 46392 31.781
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 78.7 0.383 1.9 7328
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.65 27.746 46391 2354 98.02 0.175 0.175 0.174 0.1785 0.206 0.2085 RANDOM 24.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.08 -0.94 0.35 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.958 r_dihedral_angle_4_deg 16.236 r_dihedral_angle_3_deg 11.916 r_dihedral_angle_1_deg 6.839 r_scangle_it 6.603 r_scbond_it 4.879 r_mcangle_it 2.887 r_mcbond_it 2.1 r_angle_refined_deg 1.615 r_angle_other_deg 0.972
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.958 r_dihedral_angle_4_deg 16.236 r_dihedral_angle_3_deg 11.916 r_dihedral_angle_1_deg 6.839 r_scangle_it 6.603 r_scbond_it 4.879 r_mcangle_it 2.887 r_mcbond_it 2.1 r_angle_refined_deg 1.615 r_angle_other_deg 0.972 r_mcbond_other 0.547 r_symmetry_vdw_other 0.294 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.218 r_nbd_other 0.211 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.138 r_chiral_restr 0.093 r_nbtor_other 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2345 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing