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Structure of morphinone reductase in complex with tetrahydroNAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 2.5M ammonium sulphate, 0.1M Hepes, saturating tetrahydroNAD, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.27 62.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.271 α = 90 b = 118.888 β = 90 c = 180.708 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 20 89.2 0.097 12.1 4.2 123781 123781 18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.34 85.4 0.493 2.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 12 94812 94812 4985 89.2 0.1557 0.15696 0.1557 0.1564 0.18063 0.1816 RANDOM 16.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.13 5.23 -3.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.676 r_dihedral_angle_4_deg 17.92 r_dihedral_angle_3_deg 12.489 r_sphericity_free 9.738 r_sphericity_bonded 8.683 r_dihedral_angle_1_deg 6.242 r_scangle_it 4.558 r_scbond_it 3.437 r_mcangle_it 2.267 r_rigid_bond_restr 1.875
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.676 r_dihedral_angle_4_deg 17.92 r_dihedral_angle_3_deg 12.489 r_sphericity_free 9.738 r_sphericity_bonded 8.683 r_dihedral_angle_1_deg 6.242 r_scangle_it 4.558 r_scbond_it 3.437 r_mcangle_it 2.267 r_rigid_bond_restr 1.875 r_angle_refined_deg 1.837 r_mcbond_it 1.833 r_mcbond_other 1.193 r_angle_other_deg 0.975 r_symmetry_vdw_other 0.219 r_nbd_refined 0.212 r_nbd_other 0.21 r_nbtor_refined 0.182 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.152 r_chiral_restr 0.107 r_nbtor_other 0.084 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2807 Nucleic Acid Atoms Solvent Atoms 684 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling AMoRE phasing