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Short Form HGFA with Inhibitory Fab75
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YC0 pdb 1YC0, pdb 1FVD experimental model PDB 1FVD pdb 1YC0, pdb 1FVD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 1:1 mixture of protein complex solution at 15 mg/mL and reservoir containing 20% PEG 10000, 0.1M Hepes, pH 7.5, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.26 45.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.82 α = 98.39 b = 48.23 β = 96.24 c = 97.05 γ = 100.77
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 94.4 0.048 3 1.9 32514 32514 -2 34
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 74.5 0.212 3 1.7 2563
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb 1YC0, pdb 1FVD 2.2 47.51 -2 32514 30979 1535 94.4 0.195 0.19537 0.19278 0.191 0.24797 0.2423 RANDOM 24.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 -0.01 -0.1 -0.62 -0.44 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.927 r_dihedral_angle_4_deg 16.975 r_dihedral_angle_3_deg 13.984 r_dihedral_angle_1_deg 5.88 r_scangle_it 4.217 r_mcangle_it 3.697 r_scbond_it 2.864 r_mcbond_it 2.369 r_angle_refined_deg 1.164 r_symmetry_vdw_refined 0.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.927 r_dihedral_angle_4_deg 16.975 r_dihedral_angle_3_deg 13.984 r_dihedral_angle_1_deg 5.88 r_scangle_it 4.217 r_mcangle_it 3.697 r_scbond_it 2.864 r_mcbond_it 2.369 r_angle_refined_deg 1.164 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5179 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing