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Crystal structure of a putative tena-like thiaminase (tena-1, sso2206) from sulfolobus solfataricus p2 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 NANODROP, 2.4M (NH4)2SO4, 0.1M HEPES pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.67 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.862 α = 90 b = 88.862 β = 90 c = 135.76 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing 2007-07-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.918381, 0.979310, 0.978921 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 38.152 99.8 0.057 0.057 8.7 7.7 87321
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 98.1 0.688 0.688 0.9 4.8 6228
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 38.152 87230 4372 99.78 0.166 0.166 0.165 0.1747 0.184 0.1923 RANDOM 21.706
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.22 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.449 r_dihedral_angle_4_deg 13.266 r_dihedral_angle_3_deg 10.186 r_scangle_it 5.437 r_scbond_it 3.839 r_dihedral_angle_1_deg 3.608 r_mcangle_it 2.539 r_mcbond_it 1.667 r_angle_refined_deg 1.5 r_angle_other_deg 1.344
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.449 r_dihedral_angle_4_deg 13.266 r_dihedral_angle_3_deg 10.186 r_scangle_it 5.437 r_scbond_it 3.839 r_dihedral_angle_1_deg 3.608 r_mcangle_it 2.539 r_mcbond_it 1.667 r_angle_refined_deg 1.5 r_angle_other_deg 1.344 r_mcbond_other 0.439 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.203 r_nbtor_refined 0.18 r_nbd_other 0.141 r_symmetry_vdw_other 0.137 r_xyhbond_nbd_refined 0.115 r_chiral_restr 0.105 r_nbtor_other 0.074 r_symmetry_vdw_refined 0.069 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3329 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SHARP phasing SHELXD phasing