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Crystal structure of the uncharacterized protein yfeY from Escherichia coli
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 294 100mM Tris-HCl pH 8.5, 2M Ammonium sulfate, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.05 39.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.599 α = 90 b = 37.599 β = 90 c = 420.261 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97958 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 37.45 98.7 0.09 0.09 20.1 8 18942 18942 28.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 96.6 0.238 0.238 5.8 6.4 2650
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 20 18913 18913 971 98.81 0.221 0.217 0.2155 0.296 0.2902 RANDOM 32.552
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.12 -1.12 2.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.084 r_dihedral_angle_4_deg 20.905 r_dihedral_angle_3_deg 17.023 r_dihedral_angle_1_deg 6.659 r_scangle_it 4.47 r_scbond_it 2.824 r_mcangle_it 1.968 r_angle_refined_deg 1.543 r_mcbond_it 1.151 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.084 r_dihedral_angle_4_deg 20.905 r_dihedral_angle_3_deg 17.023 r_dihedral_angle_1_deg 6.659 r_scangle_it 4.47 r_scbond_it 2.824 r_mcangle_it 1.968 r_angle_refined_deg 1.543 r_mcbond_it 1.151 r_nbtor_refined 0.305 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.195 r_symmetry_hbond_refined 0.179 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2233 Nucleic Acid Atoms Solvent Atoms 113 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction SCALEPACK data scaling SHELXCD phasing SHELXE model building