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Crystal structure of Salmonella effector protein SopA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.2M Sodium Chloride, 0.1M Bis-Tris(pH5.5), 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.65 53.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.732 α = 90 b = 68.536 β = 90.9 c = 106.613 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-03-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97945, 0.97964, 1.06369, 0.95373 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 94.6 0.062 27.6 6.8 35780 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 84 0.44 3 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 50 33990 1790 96.99 0.27061 0.26957 0.2862 0.29052 RANDOM 57.766
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.39 -2.41 -0.63 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.789 r_dihedral_angle_3_deg 21.288 r_dihedral_angle_4_deg 15.216 r_dihedral_angle_1_deg 7.92 r_scangle_it 1.376 r_angle_refined_deg 0.994 r_scbond_it 0.928 r_mcangle_it 0.885 r_mcbond_it 0.57 r_nbtor_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.789 r_dihedral_angle_3_deg 21.288 r_dihedral_angle_4_deg 15.216 r_dihedral_angle_1_deg 7.92 r_scangle_it 1.376 r_angle_refined_deg 0.994 r_scbond_it 0.928 r_mcangle_it 0.885 r_mcbond_it 0.57 r_nbtor_refined 0.321 r_nbd_refined 0.27 r_symmetry_vdw_refined 0.214 r_symmetry_hbond_refined 0.193 r_xyhbond_nbd_refined 0.19 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9346 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHARP phasing