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The crystal structure of a homologue of telluride resistance protein (TerD), SCO6318 from Streptomyces coelicolor A3(2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.6 289 0.1M Hepes, 3.4M Na Formate, 40% Jeffamine M-600, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.29 46.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.821 α = 90 b = 67.821 β = 90 c = 170.866 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2006-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97929 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 46.18 99.7 0.086 45.75 9.4 24107 24107 41.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 100 0.591 4.1 9.5 1552
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 46.18 22786 22786 1225 99.64 0.1914 0.1914 0.1895 0.1894 0.22546 0.2252 RANDOM 50.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.27 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.381 r_dihedral_angle_4_deg 16.654 r_dihedral_angle_3_deg 15.23 r_dihedral_angle_1_deg 6.478 r_scangle_it 3.675 r_scbond_it 2.333 r_angle_refined_deg 1.547 r_mcangle_it 1.425 r_mcbond_it 0.8 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.381 r_dihedral_angle_4_deg 16.654 r_dihedral_angle_3_deg 15.23 r_dihedral_angle_1_deg 6.478 r_scangle_it 3.675 r_scbond_it 2.333 r_angle_refined_deg 1.547 r_mcangle_it 1.425 r_mcbond_it 0.8 r_nbtor_refined 0.303 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.178 r_metal_ion_refined 0.151 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.116 r_symmetry_hbond_refined 0.11 r_symmetry_metal_ion_refined 0.044 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2648 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing HKL-3000 phasing