☰ Navigation Tabs
Crystal structure of multiple antibiotic-resistance repressor (MarR) (YP_013417.1) from Listeria monocytogenes 4b F2365 at 2.07 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 NANODROP, 29.545% PEG 4000, 0.2M Ammonium acetate, 0.1M Citric acid pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.47 50.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.25 α = 90 b = 159.7 β = 103.26 c = 90.27 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2007-03-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97939, 0.97918 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 46.984 93.7 0.149 7.65 79209 33.42
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.07 2.14 82.5 0.571 2.1 6323
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.07 46.984 79173 3967 98.11 0.242 0.242 0.239 0.2418 0.293 0.2906 RANDOM 37.773
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.94 0.53 -1.67 2.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.964 r_dihedral_angle_3_deg 10.919 r_dihedral_angle_4_deg 8.865 r_scangle_it 5.724 r_scbond_it 4.184 r_dihedral_angle_1_deg 2.874 r_mcangle_it 2.288 r_mcbond_it 1.523 r_angle_refined_deg 1.258 r_angle_other_deg 0.789
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.964 r_dihedral_angle_3_deg 10.919 r_dihedral_angle_4_deg 8.865 r_scangle_it 5.724 r_scbond_it 4.184 r_dihedral_angle_1_deg 2.874 r_mcangle_it 2.288 r_mcbond_it 1.523 r_angle_refined_deg 1.258 r_angle_other_deg 0.789 r_mcbond_other 0.476 r_symmetry_hbond_refined 0.24 r_xyhbond_nbd_refined 0.203 r_nbd_refined 0.193 r_nbtor_refined 0.175 r_symmetry_vdw_refined 0.168 r_symmetry_vdw_other 0.142 r_nbd_other 0.136 r_nbtor_other 0.085 r_chiral_restr 0.07 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_xyhbond_nbd_other 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8349 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing