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Crystal structure of unknown function protein VCA1059
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 35% Tacsimate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.68 54.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.514 α = 90 b = 175.514 β = 90 c = 42.63 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97918 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 95.3 0.095 35.58 5.3 30250 28834 -3 59.191
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.62 78.6 0.256 6.19 4.4 319
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 41.03 13868 13868 736 96.48 0.21124 0.21124 0.20846 0.2281 0.26533 0.2792 RANDOM 65.333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.78 -1.89 -3.78 5.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.047 r_dihedral_angle_4_deg 17.252 r_dihedral_angle_3_deg 15.71 r_dihedral_angle_1_deg 5.912 r_scangle_it 3.559 r_scbond_it 2.364 r_mcangle_it 1.463 r_angle_refined_deg 1.353 r_mcbond_it 0.931 r_symmetry_hbond_refined 0.342
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.047 r_dihedral_angle_4_deg 17.252 r_dihedral_angle_3_deg 15.71 r_dihedral_angle_1_deg 5.912 r_scangle_it 3.559 r_scbond_it 2.364 r_mcangle_it 1.463 r_angle_refined_deg 1.353 r_mcbond_it 0.931 r_symmetry_hbond_refined 0.342 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.266 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.094 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2908 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing