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Crystal structure of the C-terminal domain of an AAA ATPase from Enterococcus faecium DO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 294 100mM Imidazole pH 6.5, 1M Sodium acetate hydrate, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.5 50.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.868 α = 90 b = 87.016 β = 90 c = 87.703 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-07-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 87.706 100 0.149 0.149 16.1 14.3 22041 22041 30.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.662 0.662 4.1 14.5 3160
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 20 21975 21975 1128 99.99 0.227 0.224 0.275 0.2329 RANDOM 39.761
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.52 -2.07 -1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.775 r_dihedral_angle_3_deg 15.222 r_dihedral_angle_4_deg 15.201 r_dihedral_angle_1_deg 5.255 r_scangle_it 4.442 r_scbond_it 2.642 r_mcangle_it 1.6 r_angle_refined_deg 1.549 r_mcbond_it 0.967 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.775 r_dihedral_angle_3_deg 15.222 r_dihedral_angle_4_deg 15.201 r_dihedral_angle_1_deg 5.255 r_scangle_it 4.442 r_scbond_it 2.642 r_mcangle_it 1.6 r_angle_refined_deg 1.549 r_mcbond_it 0.967 r_nbtor_refined 0.299 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.134 r_symmetry_vdw_refined 0.108 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2528 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building