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Crystal structure of AF1382 from Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.6 291 USING 1.0 MICROLITER DROPS CONTAINING EQUAL VOLUMES OF PROTEIN CONCENTRATE (2.8 mg/ml) AND SOLUTION CONTAINING 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM ACETATE, 30% w/v POLYETHYLENE GLYCOL MONOMETHYL ETHER, pH 4.6, MICROBATCH, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.7 54.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.033 α = 90 b = 53.033 β = 90 c = 40.968 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD ROSENBAUM 2007-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97240, 1.90000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.9 0.051 12.96 13.3 19060
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 99.8 0.233 12.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Sulfur SAD THROUGHOUT 1.85 37.5 9373 475 99.89 0.23874 0.23661 0.2367 0.27983 0.2803 RANDOM 23.008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.19 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.38 r_dihedral_angle_3_deg 13.483 r_dihedral_angle_1_deg 5.619 r_dihedral_angle_4_deg 5.142 r_scangle_it 3.166 r_scbond_it 1.994 r_mcangle_it 1.329 r_angle_refined_deg 1.121 r_mcbond_it 0.713 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.38 r_dihedral_angle_3_deg 13.483 r_dihedral_angle_1_deg 5.619 r_dihedral_angle_4_deg 5.142 r_scangle_it 3.166 r_scbond_it 1.994 r_mcangle_it 1.329 r_angle_refined_deg 1.121 r_mcbond_it 0.713 r_nbtor_refined 0.302 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.185 r_symmetry_hbond_refined 0.184 r_xyhbond_nbd_refined 0.119 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 714 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms
Software Software Software Name Purpose SGXPRO model building REFMAC refinement SERGUI data collection HKL-2000 data reduction HKL-2000 data scaling SGXPRO phasing