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Crystal structure of a vesicular stomatitis virus nucleocapsid protein Ser290Trp mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 5.5 % PEG 3350, 200 mM sodium chloride, 100mM sodium acetate, pH 4.5, vapor diffusion, hanging drop, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 3.1 60.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.456 α = 90 b = 236.652 β = 90 c = 74.718 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD MARMOSAIC 225 mm CCD 2006-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 41.62 74.3 0.084 19 4.62 54826
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.9 44.9 0.172 2.7 3262
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 41.62 54826 2796 74.41 0.246 0.243 0.2486 0.286 0.2867 RANDOM 34.198
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.59 -1.74 -2.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.78 r_dihedral_angle_3_deg 15.887 r_dihedral_angle_4_deg 12.559 r_dihedral_angle_1_deg 4.475 r_mcangle_it 2.03 r_scangle_it 1.379 r_mcbond_it 1.126 r_angle_refined_deg 0.953 r_scbond_it 0.879 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.78 r_dihedral_angle_3_deg 15.887 r_dihedral_angle_4_deg 12.559 r_dihedral_angle_1_deg 4.475 r_mcangle_it 2.03 r_scangle_it 1.379 r_mcbond_it 1.126 r_angle_refined_deg 0.953 r_scbond_it 0.879 r_nbtor_refined 0.297 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.127 r_xyhbond_nbd_refined 0.119 r_symmetry_hbond_refined 0.102 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16675 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing