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Crystal structure of uncharacterized protein BH1478 from Bacillus halodurans
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2P61 PDB entry 2P61
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 294 100mM Bis-Tris pH 6.0, 24% PEG4000, 400mM LiCl, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.8 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.836 α = 90 b = 40.715 β = 94.7 c = 39.007 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.7 0.12 0.063 4.4 4.1 12712 12712 18.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.5 0.62 0.54 1.1 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2P61 2 20 12349 384 99.26 0.20866 0.20804 0.2111 0.2287 0.2279 RANDOM 37.872
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.48 1.09 -2.55 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.583 r_dihedral_angle_4_deg 26.957 r_dihedral_angle_3_deg 21.527 r_scangle_it 11.266 r_dihedral_angle_1_deg 8.311 r_scbond_it 7.688 r_mcangle_it 5.993 r_mcbond_it 4.733 r_angle_refined_deg 1.288 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.583 r_dihedral_angle_4_deg 26.957 r_dihedral_angle_3_deg 21.527 r_scangle_it 11.266 r_dihedral_angle_1_deg 8.311 r_scbond_it 7.688 r_mcangle_it 5.993 r_mcbond_it 4.733 r_angle_refined_deg 1.288 r_nbtor_refined 0.293 r_symmetry_hbond_refined 0.282 r_xyhbond_nbd_refined 0.232 r_nbd_refined 0.16 r_symmetry_vdw_refined 0.108 r_chiral_restr 0.101 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 962 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 6
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MAR345 data collection MOSFLM data reduction SCALA data scaling