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Crystal Structure Determination of a Blue Laccase from Lentinus Tigrinus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 296 22% PEG 4000, 0.2 M CaCl2, 100 mM TRIS HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.7 54.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.218 α = 90 b = 111.613 β = 97.75 c = 97.086 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm MIRRORS 2003-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.38 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 99.1 0.062 20.3 6.6 180651
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 97.2 0.483 3.3 8808
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 30 180593 920 99.01 0.15 0.15 0.182 0.1981 RANDOM 26.089
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.08 0.16 0.76 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.888 r_dihedral_angle_4_deg 20.329 r_dihedral_angle_3_deg 11.857 r_sphericity_free 9.026 r_sphericity_bonded 7.703 r_dihedral_angle_1_deg 6.416 r_rigid_bond_restr 2.812 r_scangle_it 2.79 r_scbond_it 2.076 r_angle_refined_deg 1.641
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.888 r_dihedral_angle_4_deg 20.329 r_dihedral_angle_3_deg 11.857 r_sphericity_free 9.026 r_sphericity_bonded 7.703 r_dihedral_angle_1_deg 6.416 r_rigid_bond_restr 2.812 r_scangle_it 2.79 r_scbond_it 2.076 r_angle_refined_deg 1.641 r_mcangle_it 1.376 r_mcbond_it 0.889 r_nbtor_refined 0.321 r_symmetry_vdw_refined 0.216 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.203 r_xyhbond_nbd_refined 0.165 r_symmetry_metal_ion_refined 0.128 r_metal_ion_refined 0.127 r_chiral_restr 0.113 r_bond_refined_d 0.015 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7624 Nucleic Acid Atoms Solvent Atoms 2134 Heterogen Atoms 277
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection