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Crystal structure of putative hydrogenase expression/formation protein hupG from Rhodopseudomonas palustris CGA009
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 291 1.5M Ammonium sulfate, 50mM MES pH 5.6, 2% Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.9 35.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.575 α = 107.72 b = 41.126 β = 99.85 c = 46.85 γ = 101.75
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 87.2 0.058 14.4 2.7 17173 17173
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 0.124 7.8 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 30 17169 16292 877 87.16 0.1565 0.15455 0.15194 0.1628 0.20133 0.2062 RANDOM 13.359
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.83 -0.56 0.14 -0.67 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.149 r_dihedral_angle_4_deg 18.381 r_dihedral_angle_3_deg 11.529 r_dihedral_angle_1_deg 5.765 r_scangle_it 3.326 r_scbond_it 2.188 r_angle_refined_deg 1.6 r_mcangle_it 1.247 r_mcbond_it 1.031 r_angle_other_deg 1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.149 r_dihedral_angle_4_deg 18.381 r_dihedral_angle_3_deg 11.529 r_dihedral_angle_1_deg 5.765 r_scangle_it 3.326 r_scbond_it 2.188 r_angle_refined_deg 1.6 r_mcangle_it 1.247 r_mcbond_it 1.031 r_angle_other_deg 1 r_symmetry_vdw_other 0.285 r_mcbond_other 0.243 r_nbd_refined 0.234 r_symmetry_hbond_refined 0.208 r_nbd_other 0.204 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.189 r_nbtor_refined 0.171 r_chiral_restr 0.09 r_nbtor_other 0.085 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1676 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building TLSMD phasing