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CRYSTAL STRUCTURE OF a putative oxidoreductase of the DsrE/DsrF-like family (SSO1126) FROM SULFOLOBUS SOLFATARICUS P2 AT 2.09 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 NANODROP, 23.1% PEG 3350, 0.193M Potassium dihydrogen phosphate, VAPOR DIFFUSION, SITTING DROP, temperature 293K 2 VAPOR DIFFUSION, SITTING DROP 293 NANODROP, 22.2% PEG 3350, 0.193M Potassium dihydrogen phosphate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.36 α = 90 b = 112.36 β = 90 c = 293.284 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-06-30 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-06-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 1.00000 SSRL BL11-1 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97937 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.09 48.737 98.9 0.066 21.12 42142 -3 48.55
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.09 2.16 88.8 0.801 2.24
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.09 48.737 42142 2098 99.62 0.177 0.177 0.176 0.1813 0.203 0.2126 RANDOM 49.899
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 0.31 0.62 -0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.706 r_dihedral_angle_3_deg 13.377 r_dihedral_angle_4_deg 10.252 r_scangle_it 6.971 r_scbond_it 5.237 r_dihedral_angle_1_deg 3.122 r_mcangle_it 2.695 r_mcbond_it 1.977 r_angle_refined_deg 1.562 r_angle_other_deg 1.048
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.706 r_dihedral_angle_3_deg 13.377 r_dihedral_angle_4_deg 10.252 r_scangle_it 6.971 r_scbond_it 5.237 r_dihedral_angle_1_deg 3.122 r_mcangle_it 2.695 r_mcbond_it 1.977 r_angle_refined_deg 1.562 r_angle_other_deg 1.048 r_symmetry_hbond_refined 0.333 r_mcbond_other 0.323 r_symmetry_vdw_other 0.297 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.202 r_nbtor_refined 0.191 r_nbd_other 0.187 r_symmetry_vdw_refined 0.13 r_chiral_restr 0.101 r_nbtor_other 0.091 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4222 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing