☰ Navigation Tabs
Crystal structure of an alpha/beta hydrolase superfamily protein from Enterococcus faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 0.01M MgCl2, 10% PEG 6000, 0.1M Tris-HCl pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.42 49.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.352 α = 90 b = 50.413 β = 110.27 c = 64.683 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2006-03-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97878, 0.97894 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99 0.068 9.1 6.8 36066 36066 -3 24.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 94.5 0.491 1.92 6 3433
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.65 33.3 35870 35870 1804 98.83 0.168 0.168 0.167 0.199 0.2762 RANDOM 30.619
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.84 1.46 -0.88 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.407 r_dihedral_angle_4_deg 17.474 r_dihedral_angle_3_deg 12.664 r_dihedral_angle_1_deg 5.894 r_scangle_it 3.08 r_scbond_it 2.044 r_angle_refined_deg 1.35 r_mcangle_it 1.263 r_mcbond_it 0.815 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.407 r_dihedral_angle_4_deg 17.474 r_dihedral_angle_3_deg 12.664 r_dihedral_angle_1_deg 5.894 r_scangle_it 3.08 r_scbond_it 2.044 r_angle_refined_deg 1.35 r_mcangle_it 1.263 r_mcbond_it 0.815 r_nbtor_refined 0.311 r_symmetry_hbond_refined 0.218 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.151 r_symmetry_vdw_refined 0.144 r_chiral_restr 0.094 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2198 Nucleic Acid Atoms Solvent Atoms 359 Heterogen Atoms 29
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building