☰ Navigation Tabs
2.0A X-ray structure of C-terminal kinase domain of p90 ribosomal S6 kinase 2: Se-Met derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 7.5%-10% PEG3350, 50mM Ammonium sulfate, 0.1M Hepes, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.06 40.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.585 α = 90 b = 46.585 β = 90 c = 293.99 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD ADJUSTABLE FOCUSING MIRRORS IN K-B GEOMETRY 2006-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97936 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 99.9 0.079 36.84 7.7 23160 23160 23160 23160 45.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.06 100 0.44 6 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 20 -3 23160 23160 1187 99.92 0.2045 0.2045 0.20276 0.2084 0.23776 0.2444 RANDOM 36.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.27 1.27 -2.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.721 r_dihedral_angle_4_deg 19.033 r_dihedral_angle_3_deg 15.644 r_dihedral_angle_1_deg 6.593 r_scangle_it 3.948 r_scbond_it 2.775 r_mcangle_it 1.646 r_angle_refined_deg 1.217 r_mcbond_it 0.899 r_angle_other_deg 0.834
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.721 r_dihedral_angle_4_deg 19.033 r_dihedral_angle_3_deg 15.644 r_dihedral_angle_1_deg 6.593 r_scangle_it 3.948 r_scbond_it 2.775 r_mcangle_it 1.646 r_angle_refined_deg 1.217 r_mcbond_it 0.899 r_angle_other_deg 0.834 r_symmetry_vdw_other 0.275 r_symmetry_vdw_refined 0.268 r_mcbond_other 0.24 r_nbd_refined 0.232 r_nbd_other 0.205 r_nbtor_refined 0.194 r_xyhbond_nbd_refined 0.152 r_metal_ion_refined 0.126 r_symmetry_hbond_refined 0.101 r_nbtor_other 0.09 r_chiral_restr 0.075 r_xyhbond_nbd_other 0.071 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2365 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing