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Crystal structure of IMP dehydrogenase/GMP reductase-like protein (NP_599840.1) from Corynebacterium glutamicum ATCC 13032 Kitasato at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 0.2M Mg(OAc)2, 30.0% MPD, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.6 52.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.13 α = 90 b = 127.13 β = 90 c = 54.85 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-06-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97925, 0.97904 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29.656 97.6 0.036 10.61 69856 -3 28.377
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 94.3 0.605 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.656 69848 3530 99.49 0.17 0.169 0.1759 0.188 0.1973 RANDOM 26.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 -0.52 1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.364 r_dihedral_angle_4_deg 14.583 r_dihedral_angle_3_deg 10.972 r_scangle_it 6.551 r_scbond_it 4.981 r_dihedral_angle_1_deg 4.472 r_mcangle_it 3 r_mcbond_it 2.246 r_angle_refined_deg 1.751 r_angle_other_deg 1.459
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.364 r_dihedral_angle_4_deg 14.583 r_dihedral_angle_3_deg 10.972 r_scangle_it 6.551 r_scbond_it 4.981 r_dihedral_angle_1_deg 4.472 r_mcangle_it 3 r_mcbond_it 2.246 r_angle_refined_deg 1.751 r_angle_other_deg 1.459 r_mcbond_other 0.521 r_symmetry_vdw_other 0.244 r_nbd_refined 0.192 r_nbtor_refined 0.164 r_nbd_other 0.163 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.115 r_symmetry_vdw_refined 0.114 r_chiral_restr 0.087 r_nbtor_other 0.077 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2727 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing