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Structure of C8a-MACPF reveals mechanism of membrane attack in complement immune defense
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 303 1M LiSO4, 5mM NiCl2, 100mM Tris, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 303K
Crystal Properties Matthews coefficient Solvent content 3.98 69.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.92 α = 90 b = 178.92 β = 90 c = 75.009 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.006 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 40 100 0.08 0.08 17.3 7.1 21349 21349 1 1 63.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.64 100 0.513 0.513 3.2 7.1 2888
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS, MAD THROUGHOUT 2.5 40 20253 20253 1089 99.98 0.25644 0.25644 0.25475 0.28725 RANDOM 53.487
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 -0.69 1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.78 r_dihedral_angle_4_deg 22.49 r_dihedral_angle_3_deg 18.819 r_dihedral_angle_1_deg 8.501 r_scangle_it 2.405 r_angle_refined_deg 1.703 r_scbond_it 1.621 r_mcangle_it 1.165 r_mcbond_it 0.695 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.78 r_dihedral_angle_4_deg 22.49 r_dihedral_angle_3_deg 18.819 r_dihedral_angle_1_deg 8.501 r_scangle_it 2.405 r_angle_refined_deg 1.703 r_scbond_it 1.621 r_mcangle_it 1.165 r_mcbond_it 0.695 r_nbtor_refined 0.31 r_nbd_refined 0.252 r_symmetry_vdw_refined 0.235 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.125 r_bond_refined_d 0.032 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2402 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling SOLVE phasing