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Structure of Bug27 from Bordetella pertussis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 277 0.1 M Na-citrate, 25% (w/v) PEG 2000, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.72 54.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.39 α = 90 b = 82.31 β = 95.35 c = 87.47 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH 2 1 x-ray 100 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2 2 SYNCHROTRON ESRF BEAMLINE ID23-1 0.979, 0.970, 0.979 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 6.56 97.3 0.057 0.1484 3.89 78417
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 99.8 0.273 4.64 3.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.92 6.56 72121 3852 99.84 0.19446 0.19143 0.1906 0.25248 0.2494 RANDOM 30.617
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.02 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.598 r_dihedral_angle_4_deg 20.131 r_dihedral_angle_3_deg 17.823 r_dihedral_angle_1_deg 12.722 r_sphericity_free 6.711 r_scangle_it 4.268 r_sphericity_bonded 3.672 r_scbond_it 3.246 r_rigid_bond_restr 2.493 r_angle_refined_deg 2.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.598 r_dihedral_angle_4_deg 20.131 r_dihedral_angle_3_deg 17.823 r_dihedral_angle_1_deg 12.722 r_sphericity_free 6.711 r_scangle_it 4.268 r_sphericity_bonded 3.672 r_scbond_it 3.246 r_rigid_bond_restr 2.493 r_angle_refined_deg 2.004 r_mcangle_it 1.958 r_mcbond_it 1.27 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.272 r_symmetry_vdw_refined 0.265 r_nbd_refined 0.261 r_chiral_restr 0.227 r_xyhbond_nbd_refined 0.202 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6548 Nucleic Acid Atoms Solvent Atoms 610 Heterogen Atoms 26
Software Software Software Name Purpose MAR345dtb data collection SHARP phasing REFMAC refinement XDS data reduction XSCALE data scaling