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Thermotoga Maritima Thymidine Kinase in the apo form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 20% PEG 3350 + 0.2 M NaSO4, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.87 34.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.6 α = 90 b = 113.5 β = 109.16 c = 54.8 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2005-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 28.61 98 0.065 13.8 3.8 44232 43333 -3 18.606
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2 75 0.225 4.4 2.7 2375
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 28.61 39001 4333 98.31 0.20899 0.20306 0.2047 0.26115 0.2606 RANDOM 22.582
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 0.45 0.93 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.644 r_dihedral_angle_4_deg 17.295 r_dihedral_angle_3_deg 16.212 r_dihedral_angle_1_deg 6.004 r_scangle_it 3.95 r_scbond_it 2.461 r_angle_refined_deg 1.594 r_mcangle_it 1.492 r_mcbond_it 0.928 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.644 r_dihedral_angle_4_deg 17.295 r_dihedral_angle_3_deg 16.212 r_dihedral_angle_1_deg 6.004 r_scangle_it 3.95 r_scbond_it 2.461 r_angle_refined_deg 1.594 r_mcangle_it 1.492 r_mcbond_it 0.928 r_nbtor_refined 0.307 r_symmetry_hbond_refined 0.228 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.106 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4731 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction XSCALE data scaling MOLREP phasing