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Coevolution of a homing endonuclease and its host target sequence
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 pH 5
Crystal Properties Matthews coefficient Solvent content 2.67 53.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.353 α = 90 b = 72.701 β = 103.88 c = 61.1 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 4 2000-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.3 92.1 0.035 18.4 3.3 20093 1.84
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.47 76.8 0.14 5.7 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 29.3 15421 778 92.1 0.219 0.216 0.2119 0.276 0.269 RANDOM 29.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.126 r_dihedral_angle_3_deg 19.131 r_dihedral_angle_4_deg 15.992 r_dihedral_angle_1_deg 8.585 r_scangle_it 2.364 r_angle_refined_deg 1.753 r_scbond_it 1.534 r_mcangle_it 1.236 r_mcbond_it 0.772 r_symmetry_hbond_refined 0.669
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.126 r_dihedral_angle_3_deg 19.131 r_dihedral_angle_4_deg 15.992 r_dihedral_angle_1_deg 8.585 r_scangle_it 2.364 r_angle_refined_deg 1.753 r_scbond_it 1.534 r_mcangle_it 1.236 r_mcbond_it 0.772 r_symmetry_hbond_refined 0.669 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.234 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.117 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_metal_ion_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2085 Nucleic Acid Atoms 1210 Solvent Atoms 46 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction CNS phasing