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2.6 Angstrom Crystal Structure of the Complex Between 11-(decyldithiocarbonyloxy)-undecanoic acid and Mycobacterium Tuberculosis FabH.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HZP PDB ENTRY 1HZP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1M NA/K TARTATE, 100MM NA HEPES BUFFER, pH 7.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.54 51.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.411 α = 90 b = 89.123 β = 90 c = 233.29 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV RIGAKU VARIMAX CONFOCAL OPTICS 2006-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 39.73 93.2 0.108 7.4 2.54 22465 20938 43.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 98.8 0.24 4.1 2.84 2219
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HZP 2.6 15 22289 20783 2076 93.24 0.22865 0.22105 0.2227 0.29801 0.2987 RANDOM 40.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 -0.22 0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.025 r_dihedral_angle_4_deg 18.352 r_dihedral_angle_3_deg 16.231 r_dihedral_angle_1_deg 5.468 r_angle_refined_deg 1.099 r_scangle_it 0.945 r_scbond_it 0.587 r_mcangle_it 0.451 r_nbtor_refined 0.299 r_mcbond_it 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.025 r_dihedral_angle_4_deg 18.352 r_dihedral_angle_3_deg 16.231 r_dihedral_angle_1_deg 5.468 r_angle_refined_deg 1.099 r_scangle_it 0.945 r_scbond_it 0.587 r_mcangle_it 0.451 r_nbtor_refined 0.299 r_mcbond_it 0.26 r_symmetry_hbond_refined 0.212 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.149 r_symmetry_vdw_refined 0.13 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4805 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement CNS refinement CrystalClear data collection d*TREK data reduction d*TREK data scaling AMoRE phasing CNS phasing