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Crystal structure of the complex between the A246F mutant of mycobacterium beta-ketoacyl-acyl carrier protein synthase III (FABH) and 11-(decyldithiocarbonyloxy)-undecanoic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HZP PDB ENTRY 1HZP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 100MM NA CITRATE, PH 5.60, 10% ISOPROPANOL, 18% PEG-4K, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.87 33.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.301 α = 90 b = 93.052 β = 90 c = 104.722 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV RIGAKU VARIMAX CONFOCAL OPTICS 2006-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 38.02 99.8 0.095 11.3 6.37 46962 46884 26.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 99.9 0.314 5.5 6.17 4614
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HZP 1.85 25 46877 46774 4710 99.78 0.20125 0.19423 0.194 0.26396 0.265 RANDOM 22.898
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.6 1.65 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.291 r_dihedral_angle_4_deg 17.944 r_dihedral_angle_3_deg 15.472 r_scangle_it 9.897 r_scbond_it 8.492 r_dihedral_angle_1_deg 6.241 r_mcangle_it 5.921 r_mcbond_it 4.865 r_angle_refined_deg 1.222 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.291 r_dihedral_angle_4_deg 17.944 r_dihedral_angle_3_deg 15.472 r_scangle_it 9.897 r_scbond_it 8.492 r_dihedral_angle_1_deg 6.241 r_mcangle_it 5.921 r_mcbond_it 4.865 r_angle_refined_deg 1.222 r_nbtor_refined 0.304 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.177 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4811 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement CNS refinement CrystalClear data collection CrystalClear data reduction d*TREK data scaling CNS phasing AMoRE phasing