2QNU

Crystal structure of PA0076 from Pseudomonas aeruginosa PAO1 at 2.05 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52770.1M Sodium cacodylate, 0.2M Calcium acetate, 18% PEG 8000, 0.3M NDSB 256, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties
Matthews coefficientSolvent content
1.9938.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.257α = 90
b = 125.407β = 90
c = 49.876γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315MIRROR2007-02-09MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97940APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0546.3299.40.190.1917.3579.623865-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.052.11000.7470.7473.29.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.0546.322386512260.1860.1830.234RANDOM39.32
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.7-1.86-0.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.472
r_dihedral_angle_4_deg16.658
r_dihedral_angle_3_deg15.642
r_dihedral_angle_1_deg6.742
r_scangle_it4
r_scbond_it2.757
r_angle_refined_deg1.773
r_mcangle_it1.681
r_mcbond_it1.448
r_angle_other_deg0.906
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.472
r_dihedral_angle_4_deg16.658
r_dihedral_angle_3_deg15.642
r_dihedral_angle_1_deg6.742
r_scangle_it4
r_scbond_it2.757
r_angle_refined_deg1.773
r_mcangle_it1.681
r_mcbond_it1.448
r_angle_other_deg0.906
r_mcbond_other0.303
r_symmetry_vdw_other0.236
r_nbd_refined0.209
r_nbd_other0.192
r_nbtor_refined0.187
r_symmetry_vdw_refined0.166
r_symmetry_hbond_refined0.157
r_xyhbond_nbd_refined0.143
r_chiral_restr0.105
r_nbtor_other0.091
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3232
Nucleic Acid Atoms
Solvent Atoms120
Heterogen Atoms22

Software

Software
Software NamePurpose
HKL-3000data collection
HKL-3000data reduction
HKL-3000phasing
MLPHAREphasing
DMmodel building
SHELXDphasing
RESOLVEmodel building
Cootmodel building
ARP/wARPmodel building
REFMACrefinement
ADSCdata collection
HKL-3000data scaling
DMphasing
RESOLVEphasing