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Crystal structure of protein of unknown function from Agrobacterium tumefaciens str. C58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.2 M Li2SO4, 0.1 M Hepes, 25% PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.02 39.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.329 α = 90 b = 50.329 β = 90 c = 105.076 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 40 100 0.077 17.7 7.2 27485 27485 26.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 100 0.27 5.5 6.2 1335
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 40 27393 26018 1375 99.93 0.1714 0.17025 0.16873 0.1815 0.19907 0.2093 RANDOM 11.267
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.28 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.246 r_dihedral_angle_4_deg 21.853 r_dihedral_angle_3_deg 13.249 r_dihedral_angle_1_deg 6.994 r_scangle_it 2.426 r_scbond_it 1.937 r_angle_refined_deg 1.639 r_mcangle_it 1.382 r_mcbond_it 1.182 r_angle_other_deg 1.042
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.246 r_dihedral_angle_4_deg 21.853 r_dihedral_angle_3_deg 13.249 r_dihedral_angle_1_deg 6.994 r_scangle_it 2.426 r_scbond_it 1.937 r_angle_refined_deg 1.639 r_mcangle_it 1.382 r_mcbond_it 1.182 r_angle_other_deg 1.042 r_mcbond_other 0.262 r_symmetry_vdw_other 0.242 r_nbd_refined 0.214 r_nbd_other 0.201 r_nbtor_refined 0.191 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.167 r_symmetry_vdw_refined 0.138 r_chiral_restr 0.104 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1051 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing