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CRYSTAL STRUCTURE OF A PUTATIVE DNA DAMAGE-INDUCIBLE PROTEIN (CHU_0679) FROM CYTOPHAGA HUTCHINSONII ATCC 33406 AT 1.50 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 1.6M (NH4)2SO4, 10.0% Dioxane, 0.1M MES pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.43 49.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.8 α = 90 b = 64.8 β = 90 c = 148.87 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97895 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 28.061 97 0.029 34.13 11.33 29769 -3 14.54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 80.5 0.161 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 28.061 29702 1519 98.32 0.161 0.159 0.1682 0.185 0.1908 RANDOM 11.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.042 r_dihedral_angle_3_deg 10.144 r_dihedral_angle_4_deg 8.356 r_scangle_it 6.186 r_scbond_it 4.886 r_dihedral_angle_1_deg 4.305 r_mcangle_it 2.55 r_mcbond_it 1.974 r_angle_refined_deg 1.644 r_angle_other_deg 1.134
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.042 r_dihedral_angle_3_deg 10.144 r_dihedral_angle_4_deg 8.356 r_scangle_it 6.186 r_scbond_it 4.886 r_dihedral_angle_1_deg 4.305 r_mcangle_it 2.55 r_mcbond_it 1.974 r_angle_refined_deg 1.644 r_angle_other_deg 1.134 r_mcbond_other 0.472 r_symmetry_vdw_refined 0.309 r_symmetry_vdw_other 0.268 r_symmetry_hbond_refined 0.24 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.208 r_nbd_other 0.194 r_nbtor_refined 0.188 r_nbtor_other 0.094 r_chiral_restr 0.086 r_bond_refined_d 0.018 r_gen_planes_other 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1281 Nucleic Acid Atoms Solvent Atoms 250 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction