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Crystal structure of an uncharacterized protein (bh2621) from bacillus halodurans at 1.55 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 NANODROP, 0.2M Sodium chloride, 2.0M Ammonium sulfate, 0.1M Sodium cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.39 48.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.78 α = 90 b = 80.78 β = 90 c = 70.56 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-06-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97920, 0.91837, 0.97891 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 28.56 99.3 0.054 12.33 34417 -3 23.92
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 99.6 0.945 1.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.55 28.56 34365 1733 99.52 0.181 0.179 0.1838 0.212 0.2158 RANDOM 20.303
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.57 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.71 r_dihedral_angle_4_deg 17.337 r_dihedral_angle_3_deg 11.82 r_scangle_it 6.187 r_scbond_it 4.663 r_dihedral_angle_1_deg 4.619 r_mcangle_it 2.73 r_mcbond_it 1.958 r_angle_refined_deg 1.679 r_angle_other_deg 1.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.71 r_dihedral_angle_4_deg 17.337 r_dihedral_angle_3_deg 11.82 r_scangle_it 6.187 r_scbond_it 4.663 r_dihedral_angle_1_deg 4.619 r_mcangle_it 2.73 r_mcbond_it 1.958 r_angle_refined_deg 1.679 r_angle_other_deg 1.077 r_mcbond_other 0.508 r_symmetry_vdw_other 0.267 r_symmetry_hbond_refined 0.249 r_symmetry_vdw_refined 0.238 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.193 r_nbd_other 0.182 r_nbtor_refined 0.182 r_nbtor_other 0.089 r_chiral_restr 0.07 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1606 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing