☰ Navigation Tabs
structure of V267F mutant HprK/P
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JB1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.4 298 MPD, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 50.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.059 α = 119.5 b = 106.368 β = 90.02 c = 106.486 γ = 89.96
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 0.97 2006-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 99.3 0.139 13 5 81301 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.74 97.2 0.42 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1JB1 2.6 19.43 76341 4029 99.35 0.22467 0.22078 0.2119 0.29773 0.2855 RANDOM 53.564
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.02 -0.01 -0.02 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.149 r_dihedral_angle_4_deg 25.663 r_dihedral_angle_3_deg 22.333 r_dihedral_angle_1_deg 9.107 r_scangle_it 3.894 r_scbond_it 2.407 r_mcangle_it 2.145 r_angle_refined_deg 1.964 r_mcbond_it 1.213 r_nbtor_refined 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.149 r_dihedral_angle_4_deg 25.663 r_dihedral_angle_3_deg 22.333 r_dihedral_angle_1_deg 9.107 r_scangle_it 3.894 r_scbond_it 2.407 r_mcangle_it 2.145 r_angle_refined_deg 1.964 r_mcbond_it 1.213 r_nbtor_refined 0.33 r_symmetry_hbond_refined 0.279 r_nbd_refined 0.273 r_symmetry_vdw_refined 0.271 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.137 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15556 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling PHASER phasing