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Crystal structure of C-terminal domain of SMU_1151c from Streptococcus mutans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 0.1M Hepes pH 7.5, 20% PEG 3000, 0.2M Sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.13 42.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.999 α = 90 b = 53.911 β = 106.05 c = 79.924 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97930 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30 99.9 0.059 0.05 34 7 63330 63330
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 99 0.395 0.338 3.28 3.3 11540
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 29.4 60316 60316 3044 99.69 0.2 0.2 0.198 0.197 0.241 0.239 RANDOM 27.743
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 -0.85 0.79 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.506 r_dihedral_angle_4_deg 15.368 r_dihedral_angle_3_deg 14.975 r_dihedral_angle_1_deg 6.114 r_scangle_it 3.545 r_scbond_it 2.452 r_mcangle_it 1.677 r_angle_refined_deg 1.347 r_mcbond_it 1.041 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.506 r_dihedral_angle_4_deg 15.368 r_dihedral_angle_3_deg 14.975 r_dihedral_angle_1_deg 6.114 r_scangle_it 3.545 r_scbond_it 2.452 r_mcangle_it 1.677 r_angle_refined_deg 1.347 r_mcbond_it 1.041 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.221 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.135 r_chiral_restr 0.102 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4501 Nucleic Acid Atoms Solvent Atoms 437 Heterogen Atoms 14
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction SHELXD phasing SHELXE model building