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CRYSTAL STRUCTURE OF A PUTATIVE HYDROLASE OF THE ALPHA/BETA SUPERFAMILY (XCC1541) FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS AT 1.35 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 NANODROP, 0.264M Di-ammonium tartrate, 15.8% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.14 42.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.8 α = 90 b = 60.64 β = 94.57 c = 74.72 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-06-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97920 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 29.775 97.4 0.042 10.76 140150 -3 19.984
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.35 1.4 93.9 0.508 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.35 29.775 140130 7030 99.67 0.184 0.182 0.216 0.2034 RANDOM 12.979
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 0.26 0.47 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.402 r_dihedral_angle_4_deg 16.9 r_dihedral_angle_3_deg 11.019 r_scangle_it 5.57 r_dihedral_angle_1_deg 4.251 r_scbond_it 3.989 r_mcangle_it 2.615 r_mcbond_it 1.906 r_angle_refined_deg 1.767 r_angle_other_deg 1.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.402 r_dihedral_angle_4_deg 16.9 r_dihedral_angle_3_deg 11.019 r_scangle_it 5.57 r_dihedral_angle_1_deg 4.251 r_scbond_it 3.989 r_mcangle_it 2.615 r_mcbond_it 1.906 r_angle_refined_deg 1.767 r_angle_other_deg 1.124 r_mcbond_other 0.926 r_symmetry_vdw_other 0.283 r_symmetry_hbond_refined 0.224 r_nbd_refined 0.221 r_nbd_other 0.193 r_xyhbond_nbd_refined 0.183 r_nbtor_refined 0.175 r_symmetry_vdw_refined 0.115 r_nbtor_other 0.092 r_chiral_restr 0.075 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5138 Nucleic Acid Atoms Solvent Atoms 767 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing SOLVE phasing