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Crystal structure of an iolb-like protein (stm4420) from salmonella typhimurium lt2 at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 NANODROP, 0.01M Nickel (II) chloride, 1.0M Lithium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 200.14 α = 90 b = 200.14 β = 90 c = 200.14 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-04-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97913, 0.97883 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.514 99.8 0.088 8.27 104039 -3 27.76
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99 0.614 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 29.514 103941 5190 99.92 0.161 0.16 0.1605 0.181 0.1788 RANDOM 30.283
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.361 r_dihedral_angle_3_deg 11.058 r_dihedral_angle_4_deg 8.146 r_scangle_it 6.436 r_dihedral_angle_1_deg 5.401 r_scbond_it 4.968 r_mcangle_it 2.714 r_mcbond_it 1.933 r_angle_refined_deg 1.867 r_angle_other_deg 1.144
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.361 r_dihedral_angle_3_deg 11.058 r_dihedral_angle_4_deg 8.146 r_scangle_it 6.436 r_dihedral_angle_1_deg 5.401 r_scbond_it 4.968 r_mcangle_it 2.714 r_mcbond_it 1.933 r_angle_refined_deg 1.867 r_angle_other_deg 1.144 r_mcbond_other 0.537 r_symmetry_vdw_refined 0.269 r_xyhbond_nbd_refined 0.219 r_symmetry_hbond_refined 0.209 r_nbd_other 0.201 r_nbd_refined 0.183 r_symmetry_vdw_other 0.183 r_nbtor_refined 0.172 r_nbtor_other 0.086 r_chiral_restr 0.073 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4195 Nucleic Acid Atoms Solvent Atoms 721 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction