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Stenotrophomonas maltophilia L1 Metallo-beta-Lactamase Asp-120 Cys mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SML PDB ENTRY 1SML
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1M Tris.Cl, 0.2M MgCl2, 18% PEG 4000, 5% MPD, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.33 47.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.141 α = 90 b = 112.845 β = 113.35 c = 78.352 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-09-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 1.488 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 30 94.6 0.067 24 5.7 104385 98730 18.795
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.84 69.9 0.162 7 3.5 13052
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SML 1.76 26.84 104385 98579 4969 94.35 0.175 0.173 0.1731 0.212 0.2108 RANDOM 19.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.026 r_dihedral_angle_4_deg 15.91 r_dihedral_angle_3_deg 13.341 r_dihedral_angle_1_deg 5.374 r_scangle_it 1.76 r_scbond_it 1.067 r_angle_refined_deg 0.996 r_mcangle_it 0.699 r_mcbond_it 0.415 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.026 r_dihedral_angle_4_deg 15.91 r_dihedral_angle_3_deg 13.341 r_dihedral_angle_1_deg 5.374 r_scangle_it 1.76 r_scbond_it 1.067 r_angle_refined_deg 0.996 r_mcangle_it 0.699 r_mcbond_it 0.415 r_nbtor_refined 0.299 r_nbd_refined 0.18 r_symmetry_vdw_refined 0.155 r_symmetry_hbond_refined 0.117 r_metal_ion_refined 0.105 r_symmetry_metal_ion_refined 0.097 r_xyhbond_nbd_refined 0.092 r_chiral_restr 0.065 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7934 Nucleic Acid Atoms Solvent Atoms 1290 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing